Search the KEGG bioinformatics database for pathways, genes, compounds, drugs, enzymes, or diseases
Copy the command definition below into:
~/.claude/commands/kegg.md---
description: Search the KEGG bioinformatics database for pathways, genes, compounds, drugs, enzymes, or diseases
category: miscellaneous
argument-hint: <query>
---
# KEGG Search
Search the KEGG database for the user's query.
1. Determine the most relevant KEGG category from the query:
- Biological processes/signaling → search_pathways
- Gene names/symbols/organisms → search_genes
- Chemical names/formulas → search_compounds
- Enzyme names/EC numbers → search_enzymes
- Reaction descriptions → search_reactions
- Disease names/symptoms → search_diseases
- Drug names/trade names → search_drugs
- Functional modules → search_modules
- Ortholog groups → search_ko_entries
- Sugar structures → search_glycans
2. Call the appropriate search tool with: `$ARGUMENTS`
3. Display results as a compact numbered list with IDs and descriptions
4. End with: "Say a number or ID to get full details, or refine your search."
If the user picks a number, call the corresponding get_*_info tool for that entry.