<!-- COPYRIGHT NOTICE This file is part of the "Universal Biomedical Skills" project. Copyright c 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu All Rights Reserved. This code is proprietary and confidential. Unauthorized copying of this file, via any medium is strictly prohibited. Provenance:
Install with the open skills CLI (global, non-interactive — available in every Claude Code session):
npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill "biomni-general-agent" -g -a claude-code -yOr manually — clone and copy the skill directory (SKILL.md + companion files):
git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills /tmp/OpenClaw-Medical-Skills && cp -r /tmp/OpenClaw-Medical-Skills/skills/biomni-general-agent ~/.claude/skills/biomni-general-agentThis skill is a directory: SKILL.md is the entry point; the files below ship with it.
<!--
# COPYRIGHT NOTICE
# This file is part of the "Universal Biomedical Skills" project.
# Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>
# All Rights Reserved.
#
# This code is proprietary and confidential.
# Unauthorized copying of this file, via any medium is strictly prohibited.
#
# Provenance: Authenticated by MD BABU MIA
-->
---
name: biomni-general-agent
description: Use the local Biomni checkout to orchestrate its 150+ biomedical tools, databases, and know-how workflows for complex research questions.
allowed-tools:
- read_file
- run_shell_command
---
## At-a-Glance
- **description (10-20 chars):** Omni bio agent
- **keywords:** multi-tool, know-how, tutorials, protocols, databases
- **measurable_outcome:** Execute a Biomni workflow that touches ≥2 tool categories and returns a cited research summary or artifact within 15 minutes per request.
## Workflow
1. **Environment:** `cd repo && pip install .` (or follow tutorials env set up). Activate the environment with required GPUs if using heavy models.
2. **Select mode:** Choose Standard (full stack), Light (API-only), or Commercial (license-safe) per task.
3. **Plan tools:** Query the Know-How library for relevant protocols/databases before executing.
4. **Execute notebooks/scripts:** Use `repo/tutorials` or CLI entrypoints to run pipelines; log tool versions.
5. **Summarize:** Provide outputs + citations pulled from the Know-How metadata.
## Guardrails
- Respect tool/data licenses when selecting Light vs Commercial mode.
- Track provenance (tool versions, dataset snapshots) in final response.
- Keep workflows modular—reuse Biomni recipes rather than ad-hoc scripts when possible.
## References
- Full capability list, tool inventory, and tutorial notebooks documented in `README.md` and `repo/tutorials/`.
<!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE -->Search arXiv papers by keyword, author, category, or ID.
Gateway to 400+ bioinformatics skills from bioSkills and ClawBio. Covers genomics, transcriptomics, single-cell, variant calling, pharmacogenomics, metagenomics, structural biology, and more. Fetches domain-specific reference material on demand.
> Pharmaceutical research assistant for drug discovery workflows. Search bioactive compounds on ChEMBL, calculate drug-likeness (Lipinski Ro5, QED, TPSA, synthetic accessibility), look up drug-drug interactions via OpenFDA, interpret ADMET profiles, and assist with lead optimization. Use for medicinal chemistry questions, molecule property analysis, clinical pharmacology, and open-science drug research.