Monarch Initiative

Name: Monarch Initiative
Author: pipeworx-io

by pipeworx-iocommunityv0.1.0

MCP server for querying Monarch biomedical knowledge graph data, including diseases, phenotypes, genes, and variants. It supports searching nodes, fetching a node by CURIE, and retrieving associations and phenotype/gene or gene/disease links.

From the registry: Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants

GitHub Repository Website

Install & configure

Install in your client

Paste into the AI you're chatting with — it will figure out the rest

Please install the `monarch-initiative` MCP server into my current AI client (that's you).

Canonical MCP server config (HTTP transport):
- url: `https://gateway.pipeworx.io/monarch-initiative/mcp`

Note: README provides a direct HTTP MCP endpoint for the Monarch Initiative server. It also mentions an alternative full Pipeworx gateway URL (https://gateway.pipeworx.io/mcp) for access to many data sources, but the server-specific endpoint is the canonical choice for this server.

Add this MCP server to my current client's config in the correct format for you. If you need secrets or credentials I haven't provided, ASK me — do not invent values or leave raw placeholders. After adding it, tell me how to verify the server is connected.

Note: README provides a direct HTTP MCP endpoint for the Monarch Initiative server. It also mentions an alternative full Pipeworx gateway URL (https://gateway.pipeworx.io/mcp) for access to many data sources, but the server-specific endpoint is the canonical choice for this server.