Pdbe

Name: Pdbe
Author: pipeworx-io

by pipeworx-iocommunityv0.1.0

MCP server for accessing PDBe (Protein Data Bank in Europe, EBI) data through the Pipeworx gateway. The README shows how to connect to the PDBe endpoint, but it does not list any specific tools.

From the registry: PDBe (Protein Data Bank in Europe, EBI) MCP.

GitHub Repository Website

Install & configure

Install in your client

Paste into the AI you're chatting with — it will figure out the rest

Please install the `pdbe` MCP server into my current AI client (that's you).

Canonical MCP server config (HTTP transport):
- url: `https://gateway.pipeworx.io/pdbe/mcp`

Note: README provides a direct HTTP MCP endpoint for the Pdbe server. It also mentions an alternative full Pipeworx gateway endpoint, but the server-specific endpoint is the canonical choice for this extraction.

Add this MCP server to my current client's config in the correct format for you. If you need secrets or credentials I haven't provided, ASK me — do not invent values or leave raw placeholders. After adding it, tell me how to verify the server is connected.

Note: README provides a direct HTTP MCP endpoint for the Pdbe server. It also mentions an alternative full Pipeworx gateway endpoint, but the server-specific endpoint is the canonical choice for this extraction.