AI & LLM Integration for Claude Code

<!-- COPYRIGHT NOTICE This file is part of the "Universal Biomedical Skills" project. Copyright c 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu All Rights Reserved. This code is proprietary and confidential. Unauthorized copying of this file, via any medium is strictly prohibited. Provenance:

Search PubMed and bioRxiv, summarise papers with LLM, build citation graphs, and generate literature review sections.

Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.

An AI agent for therapeutic discovery that executes transparent, multi-step omics analyses including research planning, code execution, and literature reasoning.

<!-- COPYRIGHT NOTICE This file is part of the "Universal Biomedical Skills" project. Copyright c 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu All Rights Reserved. This code is proprietary and confidential. Unauthorized copying of this file, via any medium is strictly prohibited. Provenance:

Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when organizing research materials into notebooks, ingesting diverse content sources (PDFs, videos, audio, web pages, Office documents), generating AI-powered notes and summaries, creating multi-speaker podcasts from research, chatting with documents using context-aware AI, searching across materials with full-text and vector search, or running custom content transformations. Supports 16+

<!-- COPYRIGHT NOTICE This file is part of the "Universal Biomedical Skills" project. Copyright c 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu All Rights Reserved. This code is proprietary and confidential. Unauthorized copying of this file, via any medium is strictly prohibited. Provenance:

<!-- COPYRIGHT NOTICE This file is part of the "Universal Biomedical Skills" project. Copyright c 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu All Rights Reserved. This code is proprietary and confidential. Unauthorized copying of this file, via any medium is strictly prohibited. Provenance:

<!-- COPYRIGHT NOTICE This file is part of the "Universal Biomedical Skills" project. Copyright c 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu All Rights Reserved. This code is proprietary and confidential. Unauthorized copying of this file, via any medium is strictly prohibited. Provenance:

<!-- COPYRIGHT NOTICE This file is part of the "Universal Biomedical Skills" project. Copyright c 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu All Rights Reserved. This code is proprietary and confidential. Unauthorized copying of this file, via any medium is strictly prohibited. Provenance:

Expert speech-language pathologist specializing in AI-powered speech therapy, phoneme analysis, articulation visualization, voice disorders, fluency intervention, and assistive communication technology. Activate on 'speech therapy', 'articulation', 'phoneme analysis', 'voice disorder', 'fluency', 'stuttering', 'AAC', 'pronunciation', 'speech recognition', 'mellifluo.us'. NOT for general audio processing, music production, or voice acting coaching without clinical context.

<!-- COPYRIGHT NOTICE This file is part of the "Universal Biomedical Skills" project. Copyright c 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu All Rights Reserved. This code is proprietary and confidential. Unauthorized copying of this file, via any medium is strictly prohibited. Provenance:

<!-- COPYRIGHT NOTICE This file is part of the "Universal Biomedical Skills" project. Copyright c 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu All Rights Reserved. This code is proprietary and confidential. Unauthorized copying of this file, via any medium is strictly prohibited. Provenance:

<!-- COPYRIGHT NOTICE This file is part of the "Universal Biomedical Skills" project. Copyright c 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu All Rights Reserved. This code is proprietary and confidential. Unauthorized copying of this file, via any medium is strictly prohibited. Provenance:

<!-- COPYRIGHT NOTICE This file is part of the "Universal Biomedical Skills" project. Copyright c 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu All Rights Reserved. This code is proprietary and confidential. Unauthorized copying of this file, via any medium is strictly prohibited. Provenance:

Skill enabling Claude to send messages directly to instant messaging platforms, bridging AI responses with team communication.

Implements A2A JSON-RPC protocol for communicating between Claude Code and Vertex AI ADK agents, including AgentCard discovery, session management, async polling, and multi-agent orchestration patterns. Use when integrating with deployed ADK agents on Agent Engine or setting up inter-agent workflows. Trigger with \"set up A2A client\", \"connect to an ADK agent\".

Execute AI/ML task with intelligent automation

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> Set up comprehensive LLM monitoring, cost tracking, and observability

Audits and implements AI safety layers including content filtering, PII detection, bias mitigation, and LLM guardrails. Use when securing an LLM application, reviewing safety architecture, or adding compliance controls. Trigger with \"audit ai safety\", \"add safety guardrails\".

Execute AI/ML task with intelligent automation

Execute AI/ML task with intelligent automation

Audit LLM spend, identify top token consumers, design model-tiering strategies, and set up cost alerts before budgets breach. Use when AI costs are rising or untraceable. Trigger with "audit AI spend", "optimize LLM costs".

Execute AI/ML task with intelligent automation

Execute AI/ML task with intelligent automation

Execute AI/ML task with intelligent automation

Execute AI/ML task with intelligent automation

Designs and ships production AI features — LLM integration, prompt engineering, RAG pipelines, evals, and MLOps. Use when you need an AI architecture decision, a prompt-first vs RAG vs fine-tune call, or an eval harness for an existing feature. Trigger with \"build this AI feature\", \"design the RAG pipeline\".

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Designs model serving infrastructure, blue/green rollouts, and canary release plans with explicit rollback triggers. Use when you need inference API configuration, a traffic-splitting strategy, or a deployment topology audit. Trigger with \"design the model serving setup\", \"plan a canary release\".

Execute AI/ML task with intelligent automation

Execute AI/ML task with intelligent automation

Detects and diagnoses ML model decay in production — data drift, concept drift, and silent degradation. Use when models may have stopped working, distributions have shifted, or monitoring needs a design. Trigger with \"audit my ML monitoring\", \"detect model drift\".

Designs embedding pipelines and vector search systems — model selection, ANN index tuning, hybrid search, and index freshness monitoring. Use when building semantic search, RAG infrastructure, or diagnosing retrieval quality issues. Trigger with \"design embedding pipeline\", \"optimize vector search\".