Data & Analytics for Claude Code

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

Retrieve and review responses from a Google Form.

Read data from two tabs in a Google Sheet to compare and identify differences.

Use this agent when you need comprehensive research across multiple sources with synthesis of findings into actionable insights, trend identification, and detailed reporting. Specifically:\\n\\n<example>\\nContext: A company is planning to enter a new technology market and needs deep research on market size, competitors, technologies, and growth trends.\\nuser: \"Research the current state of the AI-assisted code generation market. We need to understand market size, key competitors, technology t

Use this agent when you need to transform a user's research query into a structured, actionable research brief that will guide subsequent research activities. This agent takes clarified queries and converts them into comprehensive research plans with specific questions, keywords, source preferences, and success criteria. <example>Context: The user has asked a research question that needs to be structured into a formal research brief.\nuser: "I want to understand the impact of AI on healthcare di

Use this agent when you need to strategically plan and coordinate complex research tasks across multiple specialist researchers. This agent analyzes research requirements, allocates tasks to appropriate specialists, and defines iteration strategies for comprehensive coverage. <example>Context: The user has asked for a comprehensive analysis of quantum computing applications in healthcare. user: "I need a thorough research report on how quantum computing is being applied in healthcare, including

Look up current research information using Perplexity's Sonar Pro Search or Sonar Reasoning Pro models through OpenRouter. Automatically selects the best model based on query complexity. Search academic papers, recent studies, technical documentation, and general research information with citations.

Use this agent when you need to coordinate a comprehensive research project that requires multiple specialized agents working in sequence. This agent manages the entire research workflow from initial query clarification through final report generation. <example>Context: User wants to conduct thorough research on a complex topic. user: "I need to research the impact of quantum computing on cryptography" assistant: "I'll use the research-orchestrator agent to coordinate a comprehensive research pr

Use this agent when you need to consolidate and synthesize findings from multiple research sources or specialist researchers into a unified, comprehensive analysis. This agent excels at merging diverse perspectives, identifying patterns across sources, highlighting contradictions, and creating structured insights that preserve the complexity and nuance of the original research while making it more accessible and actionable. <example>Context: The research-orchestrator has completed Phase 4 parall

Risk management and portfolio analysis specialist. Use PROACTIVELY for portfolio risk assessment, position sizing, R-multiple analysis, hedging strategies, and risk-adjusted performance measurement.

Master enterprise-grade Scala development with functional programming, distributed systems, and big data processing. Expert in Apache Pekko, Akka, Spark, ZIO/Cats Effect, and reactive architectures.

Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.

Apply the ScholarEval framework to systematically evaluate scholarly and research work. This skill provides structured evaluation methodology based on peer-reviewed research assessment criteria, enabling comprehensive analysis of academic papers, research proposals, literature reviews, and scholarly

Create publication figures with matplotlib/seaborn/plotly. Multi-panel layouts, error bars, significance markers, colorblind-safe, export PDF/EPS/TIFF, for journal-ready scientific plots.

Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.

Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building ML pipelines. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.

Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random Survival Forests, Gradient Boosting models, or Survival SVMs, evaluating survival predictions with concordance index or Brier score, handling competing risks, or implementing any survival analysis workflow with the scikit-survival library.

Scrape any webpage as clean markdown via Bright Data Web Unlocker API. Bypasses bot detection and CAPTCHA. Requires BRIGHTDATA_API_KEY and BRIGHTDATA_UNLOCKER_ZONE environment variables.

Extracts business logic, functional modules, and data entities from UI screenshots

Analyze product screenshots to extract feature lists and generate development task checklists. Use when: (1) Analyzing competitor product screenshots for feature extraction, (2) Generating PRD/task lists from UI designs, (3) Batch analyzing multiple app screens, (4) Conducting competitive analysis from visual references.

Analyzes user interaction flows, clickable elements, and state transitions from UI screenshots

Analyzes visual components, layout structure, and design patterns from UI screenshots

This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.

Statistical visualization. Scatter, box, violin, heatmaps, pair plots, regression, correlation matrices, KDE, faceted plots, for exploratory analysis and publication figures.

Search Google via Bright Data SERP API. Returns structured JSON results with title, link, and description. Requires BRIGHTDATA_API_KEY and BRIGHTDATA_UNLOCKER_ZONE environment variables.

Expert guidance for modern search optimization: SEO, Answer Engine Optimization (AEO), and Generative Engine Optimization (GEO) with AI-ready content strategies

Expert web researcher using advanced search techniques, multi-source synthesis, and iterative retrieval. Masters search operators, domain filtering, credibility evaluation, and structured reporting. Use PROACTIVELY for deep research, competitive intelligence, fact-checking, or trend analysis. Specifically:\n\n<example>\nContext: A product team wants to understand the competitive landscape before launching a new developer tool\nuser: \"Research the top five CI/CD tools for monorepos and summarize

Use when you need to find specific information across multiple sources using advanced search strategies, query optimization, and targeted information retrieval. Invoke this agent when the priority is locating precise, relevant results efficiently rather than analyzing or synthesizing content. Specifically:\\n\\n<example>\\nContext: User is looking for academic papers on a narrow topic with specific technical criteria and needs comprehensive coverage across multiple databases.\\nuser: \"I need to

Analyze git repositories to build a security ownership topology (people-to-file), compute bus factor and sensitive-code ownership, and export CSV/JSON for graph databases and visualization. Trigger only when the user explicitly wants a security-oriented ownership or bus-factor analysis grounded in git history (for example: orphaned sensitive code, security maintainers, CODEOWNERS reality checks for risk, sensitive hotspots, or ownership clusters). Do not trigger for general maintainer lists or n

Expert patterns for Segment Customer Data Platform including Analytics.js, server-side tracking, tracking plans with Protocols, identity resolution, destinations configuration, and data governance best practices. Use when: segment, analytics.js, customer data platform, cdp, tracking plan.

World-class data engineering skill for building scalable data pipelines, ETL/ELT systems, and data infrastructure. Expertise in Python, SQL, Spark, Airflow, dbt, Kafka, and modern data stack. Includes data modeling, pipeline orchestration, data quality, and DataOps. Use when designing data architectures, building data pipelines, optimizing data workflows, or implementing data governance.

World-class data science skill for statistical modeling, experimentation, causal inference, and advanced analytics. Expertise in Python (NumPy, Pandas, Scikit-learn), R, SQL, statistical methods, A/B testing, time series, and business intelligence. Includes experiment design, feature engineering, model evaluation, and stakeholder communication. Use when designing experiments, building predictive models, performing causal analysis, or driving data-driven decisions.

When the user wants to audit, review, or diagnose SEO issues on their site. Also use when the user mentions "SEO audit," "technical SEO," "why am I not ranking," "SEO issues," "on-page SEO," "meta tags review," or "SEO health check." For building pages at scale to target keywords, see programmatic-seo. For adding structured data, see schema-markup.

Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learning model predictions, computing feature importance, generating SHAP plots (waterfall, beeswarm, bar, scatter, force, heatmap), debugging models, analyzing model bias or fairness, comparing models, or implementing explainable AI. Works with tree-based models (XGBoost, LightGBM, Random Forest), deep learning (TensorFlow, PyTorch), linear models, and any black-box model

Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems with processes, queues, resources, and time-based events such as manufacturing systems, service operations, network traffic, logistics, or any system where entities interact with shared resources over time.

Calibrate simulation accuracy with systematic validation, bias detection, and continuous improvement

Create, alter, and validate Snowflake semantic views using Snowflake CLI (snow). Use when asked to build or troubleshoot semantic views/semantic layer definitions with CREATE/ALTER SEMANTIC VIEW, to validate semantic-view DDL against Snowflake via CLI, or to guide Snowflake CLI installation and connection setup.

Use when tasks involve creating, editing, analyzing, or formatting spreadsheets (`.xlsx`, `.csv`, `.tsv`) using Python (`openpyxl`, `pandas`), especially when formulas, references, and formatting need to be preserved and verified.